PM Netanyahu and Syrian President al-Sharaa
PM Netanyahu and Syrian President al-SharaaGPO, REUTERS/Khalil Ashawi

The sudden appearance of the Syrian national flag over the city of Raqqa on January 19, signaled more than a mere change in administrative control; it marked the formal execution of a strategic trap that has been closing around the region's minorities for years.

The comprehensive 14-point integration agreement signed between President Ahmad al-Sharaa and the Kurdish-led Syrian Democratic Forces (SDF) represents a definitive surrender of the autonomous project that once served as a secular buffer in the northeast. While the rhetoric coming out of Damascus celebrates this as a "victory for all Syrians" and a "pivotal inflection point" toward national unity, a cold analysis of the deal’s mechanics reveals a blueprint for the systematic liquidation of Kurdish agency.

For Israel, this realignment is a grave development, signaling the collapse of a key non-state partner and the expansion of a Turkey-backed security architecture that threatens to consolidate a new Islamist axis on Israel’s northern periphery.

The most lethal component of this new order is hidden in the specific language governing the integration of the SDF into the national security apparatus. For nearly a decade, the Kurdish leadership and its Western allies maintained that any merger with the Syrian military must preserve the SDF as a cohesive, organic unit to ensure the safety of its core constituents. Instead, Clause 4 of the new accord mandates that all military and security personnel be integrated into the Ministries of Defense and Interior on a strictly "individual basis" following a comprehensive security vetting process.

This is not a merger of equals; it is the tactical atomization of a fighting force. By stripping away the SDF’s collective identity and dispersing its members among regular Syrian units, Damascus is effectively neutralizing the only force capable of resisting central diktats or balancing the regional dominance of Sunni Islamist factions.

This centralization serves as a historic strategic victory for Turkey, transforming the "New Syria" into a frontline enforcer for Turkish national security interests. During the negotiations, Turkish Foreign Minister Hakan Fidan reportedly sat in the Oval Office, reviewing the Syrian file "map by map" to ensure that Turkish concerns were addressed point by point. The resulting agreement, specifically Clause 12, commits the Syrian state to the total expulsion of all non-Syrian members of the Kurdistan Workers' Party (PKK), fulfilling a decades-old Turkish demand to dismantle the "PKK-aligned statelet" in northern Syria.

Erdogan’s government has praised the deal as a "historic turning point," recognizing that it achieves through Syrian proxy forces what years of direct Turkish military intervention could not: the total termination of Kurdish political and military autonomy near its borders.

For Israel, a unified Syria under the Sharaa government is not a stabilizing force if it serves as a vehicle for the "lawful Islamism" favored by Turkey and Qatar. The loss of the SDF buffer means that Israel’s influence over northeastern security networks, which had grown closer in recent months through informal outreach, is effectively severed, leaving a vacuum for hostile actors to fill.

The vulnerability created by this deal extends far beyond the Kurds, casting a dark shadow over the Christians and the Druze. The Sharaa government’s push for total administrative control-evidenced by the immediate return of the Central Bank to Raqqa and the seizure of the Tishrin Dam-removes the fiscal and territorial leverage that allowed minorities to negotiate for their survival. In the south, the Druze of Suwayda watch with increasing alarm, as Israel has historically viewed their autonomy as a direct challenge to the central regime in Damascus and a necessary balance to regional security concerns. The Israeli security establishment now faces a reality where the "secular shield" provided by the SDF has been replaced by a centralized authority that is increasingly responsive to external Islamist patrons rather than the protective needs of its own citizens.

The international validation of this accord by nations such as Qatar and Saudi Arabia further suggests that the "New Syria" is being built upon a transactional logic that marginalizes minority rights in favor of regional consolidation.

The return of state authority to the border crossings and the critical oil fields of Deir ez-Zor ensures that the central government has the resources to enforce this new, rigid hierarchy. While President al-Sharaa issued Presidential Decree No. 13 to recognize Kurdish cultural rights, these are concessions of sentiment, not of power. They provide the Kurds with a holiday and a language but strip them of the weapons and the institutional scaffolding required to protect either.

Israel must now navigate a northern front where the "Victory Doctrine" of its neighbors-specifically Turkey-has succeeded in replacing a pluralistic buffer with a centralized Islamist-aligned cage.

In this new order, the "peace of the state" is merely the silence of the marginalized, and Israel must now prepare for a Syria that is more unified, more Islamist, and significantly more dangerous.

Amine Ayoub, a fellow at the Middle East Forum, is a policy analyst and writer based in Morocco. Follow him on X: @amineayoubx